There are lots of possible causes...oil on the clutch facing, uneven pressure plate engagement (stuff worn inside), loose motor mounts, loose pedal linkage, in addition to hot spots on the flywheel or pressure plate, also pilot bushing condition.
Probably not the case but I had a 65 El Camino years ago that kept going through clutches, pressure plates and even a flywheel due to chatter on takeoff. Finally a friend of my dads who was a mechanic had me take it out on a parking lot and drive slowly in a circle. I could feel the car sort of waddle. He told me to get some GM posi treatment. No more clutch problems.
I have played with manual trans Fords all my adult life , they seem to the worst for chatter . I found the flywheel from the factory has very slight cone shape to it to help chatter . Also the wave plate between the clutch discs are much greater on OEM discs than aftermarket discs . It could many things as Mr Squirrel has suggested . Weak rear springs are a killer also , as well soft body mounts . My OT , Power Wagon has a super HD puck disc , it’s very similar to a tractor engaged or disengaged , you try to ease it out slowly and a trip to the dentist isn’t far off .
What we used to do years ago-------Bumper up to a solid wall & let the clutch out slowly & let the unit burn in about 5 seconds, repeat as needed.
Being your talking about a wagon,has it had a trailer hitch? If so,that's more likely too of burned plate n the cutch<warped them,an hot spot flywheel. Are all your mounts good? Just on the off shot=Did you just put in a new drive shaft?< it could be too long,if so,you get a banging sound too,as it hits bottom in side the tailshaft.
Some brands of clutch plates are prone to chatter. In Fords I always used genuine Ford clutch plates in my Fords. Fords seem to be more prone to chatter. Sometimes you can do everything right and the clutch will still chatter. Bones
It's interesting to me how stuff that at first glance might not seem to be related can cause other problems. Clutch chatter didn't think of that. Roached leaf springs also cause all kinds of braking and handling problems. Will trash shocks out right away too.